Scripts and software

ADZE: a rarefaction approach for counting alleles private to combinations of populations. [link][paper][packages]


asd is a program for quickly calculating pairwise individual allele sharing distances. This is unsupported alpha software. [.tar.gz][performance info]


run_asd.bash is a helper script that discovers how your structure file is formatted and runs asd with the proper calls. This is unsupported alpha software. [.bash]


respect is a program for calculating and plotting resampled uni- and bi-variate minor allele frequency spectrums. This is unsupported alpha software. [.tar.gz]


transpose.bash is a bash script that transposes a rectangular text file. Note this is incredibly slow for files with many columns, but uses very little memory. This is unsupported alpha software. [.bash]


tp very simple program that transposes a rectangular text file. Faster than the bash script, but uses quite a lot of memory. This is unsupported alpha software. [.tar.gz]


error.bars.R is an R script to put error bars on your data. [.R]


copy2png.R is an R script to create a dev.copy2png() function analogous to dev.copy2pdf(). [.R]